Publications
2022
Alexander E, Cai LT, Fuchs S, Hladnik TC, Zhang Y, Subramanian V, Guilbeault NC, Vijayakumar C, Arunachalam M, Juntti SA, Thiele TR, Arrenberg AB, Cooper EA
Optic flow in the natural habitats of zebrafish supports spatial biases in visual self-motion estimation
Current Biology, Online Publication, Nov 2, 2022, doi: https://doi.org/10.1016/j.cub.2022.10.009
see also: https://news.northwestern.edu/stories/2022/10/why-fish-look-down-when-they-swim/
Zhang Y, Huang R, Nörenberg W, Arrenberg AB
A robust receptive field code for optic flow detection and decomposition during self-motion
Current Biology, Online Publication, May 11, 2022, doi: https://doi.org/10.1016/j.cub.2022.04.048
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Leyden C, Brüggemann T, Debinski F, Simacek CA, Dehmelt FA, Arrenberg AB
Efficacy of Tricaine (MS-222) and Hypothermia as Anesthetic Agents for Blocking Sensorimotor Responses in Larval Zebrafish
Front Vet Sci. 2022 Mar 28;9:864573. doi: 10.3389/fvets.2022.864573. eCollection 2022. PMID: 35419446 Free PMC article
2021
Kohl S, Llavona P, Sauer A, Reuter P, Weisschuh N, Kempf M, Dehmelt FA, Arrenberg AB, Sliesoraityte I, Zrenner E, van Schooneveld MJ, Rudolph G, Kühlewein L, Wissinger B.
A duplication on chromosome 16q12 affecting the IRXB gene cluster is associated with autosomal dominant cone dystrophy with early tritanopic color vision defect
Hum Mol Genet. 2021 Jun 17;30(13):1218-1229. doi: 10.1093/hmg/ddab117
Alexander E., Subramanian V. K., Hladnik T. C., Guilbeault N. C., Cai L. T., Thiele T. R., Arrenberg A. B., Cooper E. A.
Self-motion cues in the natural habitats of zebrafish support lower visual field bias
Vision Sciences Society Annual Meeting Abstract September 2021, Vol.21, 1974. doi:https://doi.org/10.1167/jov.21.9.1974
Leyden C., Brysch C., Arrenberg A. B.
A distributed saccade-associated network encodes high velocity conjugate and monocular eye movements in the zebrafish hindbrain
Scientific Reports 2021 Jun 16, Sci Rep 11, 12644. doi: 10.1038/s41598-021-90315-2
Dehmelt F. A., Meier R., Hinz J., Yoshimatsu T., Simacek C. A., Huang R., Wang K., Baden T., Arrenberg A. B.
Spherical arena reveals optokinetic response tuning to stimulus location, size, and frequency across entire visual field of larval zebrafish
eLife, accepted manuscript 2021 Jun 08, full online edition to follow
Kun Wang, Burkhard Arrenberg, Julian Hinz, Aristides B Arrenberg
Reduction of visual stimulus artifacts using a spherical tank for small, aquatic animals
Scientific Reports 2021 Feb 5;11(1):3204. doi: 10.1038/s41598-021-81904-2
2020
Wang K., Hinz J., Zhang Y., Thiele T. R., Arrenberg A. B.
Parallel channels for motion feature extraction in the pretectum and tectum of larval zebrafish
Cell Reports 2020 Jan 14;30(2):442-453.e6. doi: 10.1016/j.celrep.2019.12.031
2019
Brysch C., Leyden C., Arrenberg A. B.
Functional architecture underlying binocular coordination of eye position and velocity in the larval zebrafish hindbrain
BMC Biology 17, Article number: 110 (2019)
Zhang Y. & Arrenberg A. B.
High throughput, rapid receptive field estimation for global motion sensitive neurons using a contiguous motion noise stimulus
Journal of Neuroscience Methods, Volume 326 doi: 10.1016/j.jneumeth.2019.108366
Wang K., Hinz J., Haikala V., Reiff D. F.& Arrenberg A. B.
Selective processing of all rotational and translational optic flow directions in the zebrafish pretectum and tectum
BMC Biology 17, Article number: 29 (2019)
Ecke G. A., Bruijns S. A., Hölscher J., Mikulasch F. A., Witschel T., Arrenberg A. B., Mallot H. A.
Sparse Coding Predicts Optic Flow Specificities of Zebrafish Pretectal Neurons
Neural Comput & Applic (2019)
Arrenberg A.B.
3D Visualization for Setups in Animal Experiments
Journal: in preparation
2018
Dehmelt F. A., von Darányi A., Leyden C., Arrenberg A. B.
Evoking and Tracking Zebrafish Eye Movement in Multiple Larvae with ZebEyeTrack
Nature Protocols 13(7): pp. 1539–1568. doi: 10.1038/s41596-018-0002-0
2017
Chagas M. A., Prieto-Godino L. L., Arrenberg A. B., Baden T.
The €100 Lab: A 3D-Printable Open-Source Platform for Fluorescence Microscopy, Optogenetics, and Accurate Temperature Control during Behaviour of Zebrafish, Drosophila, and Caenorhabditis Elegans
PLoS Biology 18 July 2017. doi: 10.1371/journal.pbio.2002702
Reinig S., Driever W., Arrenberg A. B.
The Descending Diencephalic Dopamine System Is Tuned to Sensory Stimuli
Current Biology 27(3): pp. 318–333. doi: 10.1016/j.cub.2016.11.059
2016
Arrenberg A. B.
Fiber Optic-Based Photostimulation of Larval Zebrafish
Methods in Molecular Biology 1451: pp. 343–354. doi: 10.1007/978-1-4939-3771-4_24
2015
Lee M. M., Arrenberg A. B., Aksay E.
A Structural and Genotypic Scaffold Underlying Temporal Integration
Journal of Neuroscience 35(20): pp. 7903–7920. doi: 10.1523/JNEUROSCI.3045-14.2015
2014
Kubo F., Hablitzel B., dal Maschio M., Driever W., Baier H., Arrenberg A. B.
Functional Architecture of an Optic Flow-Responsive Area That Drives Horizontal Eye Movements in Zebrafish
Neuron 81(6): pp. 1344-1359. doi: 10.1016/j.neuron.2014.02.043
Gonçalves P. J., Arrenberg A. B., Hablitzel B., Baier H., Machens C. K.
Optogenetic perturbations reveal the dynamics of an oculomotor integrator
Front Neural Circuits. 2014 Feb 28;8:10. doi: 10.3389/fncir.2014.00010. eCollection 2014
2013
Arrenberg A. B., Driever W.
Integrating anatomy and function for zebrafish circuit analysis
Front Neural Circuits. 2013 Apr 23;7:74. doi: 10.3389/fncir.2013.00074. eCollection 2013
2012
Fernandes A. M., Fero K., Arrenberg A. B., Bergeron S. A., Driever W., Burgess H. A.
Deep Brain Photoreceptors Control Light-Seeking Behavior in Zebrafish Larvae
Current Biology 22(21): pp. 2042-2047. doi: 10.1016/j.cub.2012.08.016
Warp E., Baier H., Arrenberg A. B., Del Bene F., Conner A., Oldfield C. S., Friedmann D., Wyart C., Agarwal G., Isacoff E. Y.
Emergence of Patterned Activity in the Developing Zebrafish Spinal Cord
Current Biology 22(2): pp. 93-102. doi: 10.1016/j.cub.2011.12.002
2011
Miri A., Daie K., Arrenberg A. B., Baier H., Aksay E., Tank D. W.
Spatial Gradients and Multidimensional Dynamics in a Neural Integrator Circuit
Nature Neuroscience 14(9): pp. 1150-1159. doi: 10.1038/nn.2888
2010
Arrenberg A. B., Stainier D. Y., Baier H., Huisken J.
Optogenetic Control of Cardiac Function
Science 330(6006): pp. 971-974. doi: 10.1126/science.1195929
Schoonheim P. J., Arrenberg A. B., Del Bene F., Baier H.
Optogenetic Localization and Genetic Perturbation of Saccade-Generating Neurons in Zebrafish
Journal of Neuroscience 30(20): pp. 7111-7120. doi: 10.1523/JNEUROSCI.5193-09.2010
2009
Arrenberg A. B., Del Bene F., Baier H.
Optical Control of Zebrafish Behavior with Halorhodopsin
Proceedings of the National Academy of Sciences 106(42): pp. 17968-17973. doi: 10.1073/pnas.0906252106
2007
Scott E. K., Mason L., Arrenberg A. B., Ziv L., Gosse N. J., Xiao T., Chi N. C., Asakawa K., Kawakami K., Baier H.
Targeting Neural Circuitry in Zebrafish Using GAL4 Enhancer Trapping
Journal: Nature Methods 4(4): pp. 323-326. doi: 10.1038/nmeth1033