Paper in preparation

Zhang Y., Huang R., Nörenberg W., Arrenberg A. B.
A robust receptive field code for optic flow detection and decomposition during self-motion
BioRxiv, October 2021, doi: https://doi.org/10.1101/2021.10.06.463330


Publications

2021

Alexander E., Subramanian V. K., Hladnik T. C., Guilbeault N. C., Cai L. T., Thiele T. R., Arrenberg A. B., Cooper E. A.
Self-motion cues in the natural habitats of zebrafish support lower visual field bias
Vision Sciences Society Annual Meeting Abstract  September 2021, Vol.21, 1974. doi:https://doi.org/10.1167/jov.21.9.1974

Leyden C., Brysch C., Arrenberg A. B.
A distributed saccade-associated network encodes high velocity conjugate and monocular eye movements in the zebrafish hindbrain
Scientific Reports 2021 Jun 16, Sci Rep 11, 12644. doi: 10.1038/s41598-021-90315-2

Dehmelt F. A., Meier R., Hinz J., Yoshimatsu T., Simacek C. A., Huang R., Wang K., Baden T., Arrenberg A. B.
Spherical arena reveals optokinetic response tuning to stimulus location, size, and frequency across entire visual field of larval zebrafish
eLife, accepted manuscript 2021 Jun 08, full online edition to follow

Kun Wang, Burkhard Arrenberg, Julian Hinz, Aristides B Arrenberg
Reduction of visual stimulus artifacts using a spherical tank for small, aquatic animals
Scientific Reports 2021 Feb 5;11(1):3204. doi: 10.1038/s41598-021-81904-2

2020

Wang K., Hinz J., Zhang Y., Thiele T. R., Arrenberg A. B.
Parallel channels for motion feature extraction in the pretectum and tectum of larval zebrafish
Cell Reports 2020 Jan 14;30(2):442-453.e6. doi: 10.1016/j.celrep.2019.12.031

2019

Brysch C., Leyden C., Arrenberg A. B.
Functional architecture underlying binocular coordination of eye position and velocity in the larval zebrafish hindbrain
BMC Biology 17, Article number: 110 (2019)

Zhang Y. & Arrenberg A. B.
High throughput, rapid receptive field estimation for global motion sensitive neurons using a contiguous motion noise stimulus
Journal of Neuroscience Methods, Volume 326 doi: 10.1016/j.jneumeth.2019.108366

Wang K., Hinz J., Haikala V., Reiff D. F.& Arrenberg A. B.
Selective processing of all rotational and translational optic flow directions in the zebrafish pretectum and tectum
BMC Biology 17, Article number: 29 (2019)

Ecke G. A., Bruijns S. A., Hölscher J., Mikulasch F. A., Witschel T., Arrenberg A. B., Mallot H. A.
Sparse Coding Predicts Optic Flow Specificities of Zebrafish Pretectal Neurons
Neural Comput & Applic (2019)

Arrenberg A.B.
3D Visualization for Setups in Animal Experiments
Journal: in preparation

2018

Dehmelt F. A., von Darányi A., Leyden C., Arrenberg A. B.
Evoking and Tracking Zebrafish Eye Movement in Multiple Larvae with ZebEyeTrack
Nature Protocols 13(7): pp. 1539–1568. doi: 10.1038/s41596-018-0002-0

2017

Chagas M. A., Prieto-Godino L. L., Arrenberg A. B., Baden T.
The €100 Lab: A 3D-Printable Open-Source Platform for Fluorescence Microscopy, Optogenetics, and Accurate Temperature Control during Behaviour of Zebrafish, Drosophila, and Caenorhabditis Elegans
PLoS Biology 18 July 2017. doi: 10.1371/journal.pbio.2002702

Reinig S., Driever W., Arrenberg A. B.
The Descending Diencephalic Dopamine System Is Tuned to Sensory Stimuli
Current Biology 27(3): pp. 318–333. doi: 10.1016/j.cub.2016.11.059

2016

Arrenberg A. B.
Fiber Optic-Based Photostimulation of Larval Zebrafish
Methods in Molecular Biology 1451: pp. 343–354. doi: 10.1007/978-1-4939-3771-4_24

2015

Lee M. M., Arrenberg A. B., Aksay E.
A Structural and Genotypic Scaffold Underlying Temporal Integration
Journal of Neuroscience 35(20): pp. 7903–7920. doi: 10.1523/JNEUROSCI.3045-14.2015

2014

Kubo F., Hablitzel B., dal Maschio M., Driever W., Baier H., Arrenberg A. B.
Functional Architecture of an Optic Flow-Responsive Area That Drives Horizontal Eye Movements in Zebrafish
Neuron 81(6): pp. 1344-1359. doi: 10.1016/j.neuron.2014.02.043

Gonçalves P. J., Arrenberg A. B., Hablitzel B., Baier H., Machens C. K.
Optogenetic perturbations reveal the dynamics of an oculomotor integrator
Front Neural Circuits. 2014 Feb 28;8:10. doi: 10.3389/fncir.2014.00010. eCollection 2014

2013

Arrenberg A. B., Driever W.
Integrating anatomy and function for zebrafish circuit analysis
Front Neural Circuits. 2013 Apr 23;7:74. doi: 10.3389/fncir.2013.00074. eCollection 2013

2012

Fernandes A. M., Fero K., Arrenberg A. B., Bergeron S. A., Driever W., Burgess H. A.
Deep Brain Photoreceptors Control Light-Seeking Behavior in Zebrafish Larvae
Current Biology 22(21): pp. 2042-2047. doi: 10.1016/j.cub.2012.08.016

Warp E., Baier H., Arrenberg A. B., Del Bene F., Conner A., Oldfield C. S., Friedmann D., Wyart C., Agarwal G., Isacoff E. Y.
Emergence of Patterned Activity in the Developing Zebrafish Spinal Cord
Current Biology 22(2): pp. 93-102. doi: 10.1016/j.cub.2011.12.002

2011

Miri A., Daie K., Arrenberg A. B., Baier H., Aksay E., Tank D. W.
Spatial Gradients and Multidimensional Dynamics in a Neural Integrator Circuit
Nature Neuroscience 14(9): pp. 1150-1159. doi: 10.1038/nn.2888

2010

Arrenberg A. B., Stainier D. Y., Baier H., Huisken J.
Optogenetic Control of Cardiac Function
Science 330(6006): pp. 971-974. doi: 10.1126/science.1195929

Schoonheim P. J., Arrenberg A. B., Del Bene F., Baier H.
Optogenetic Localization and Genetic Perturbation of Saccade-Generating Neurons in Zebrafish
Journal of Neuroscience 30(20): pp. 7111-7120. doi: 10.1523/JNEUROSCI.5193-09.2010

2009

Arrenberg A. B., Del Bene F., Baier H.
Optical Control of Zebrafish Behavior with Halorhodopsin
Proceedings of the National Academy of Sciences 106(42): pp. 17968-17973. doi: 10.1073/pnas.0906252106

2007

Scott E. K., Mason L., Arrenberg A. B., Ziv L., Gosse N. J., Xiao T., Chi N. C., Asakawa K., Kawakami K., Baier H.
Targeting Neural Circuitry in Zebrafish Using GAL4 Enhancer Trapping
Journal: Nature Methods 4(4): pp. 323-326. doi: 10.1038/nmeth1033