Recently submitted manuscripts
(made available under a CC-BY-NC-ND 4.0 International license)

Dehmelt F. A., Meier R., Hinz J., Yoshimatsu T., Simacek C. A., Wang K., Baden T., Arrenberg A. B.
Spherical arena reveals optokinetic response tuning to stimulus location, size and frequency across entire visual field of larval zebrafish
(submitted 2019) Available at bioRxiv (click here)



Wang K., Hinz J., Zhang Y., Thiele T. R., Arrenberg A. B.
Parallel channels for motion feature extraction in the pretectum and tectum of larval zebrafish
Journal: Cell Reports, in press, publication on Jan 14th 2020
Available at bioRxiv (click here)


Brysch C., Leyden C., Arrenberg A. B.
Functional architecture underlying binocular coordination of eye position and velocity in the larval zebrafish hindbrain
Journal: BMC Biology 17, Article number: 110 (2019)

Zhang Y. & Arrenberg A. B.
High throughput, rapid receptive field estimation for global motion sensitive neurons using a contiguous motion noise stimulus
Journal: Journal of Neuroscience Methods, Volume 326 doi: 10.1016/j.jneumeth.2019.108366

Wang K., Hinz J., Haikala V., Reiff D. F.& Arrenberg A. B.
Selective processing of all rotational and translational optic flow directions in the zebrafish pretectum and tectum
Journal: BMC Biology 17, Article number: 29 (2019)

Ecke G. A., Bruijns S. A., Hölscher J., Mikulasch F. A., Witschel T., Arrenberg A. B., Mallot H. A.
Sparse Coding Predicts Optic Flow Specificities of Zebrafish Pretectal Neurons
Journal: Neural Comput & Applic (2019)

Arrenberg A.B.
3D Visualization for Setups in Animal Experiments
Journal: in preparation


Dehmelt F. A., von Darányi A., Leyden C., Arrenberg A. B.
Evoking and Tracking Zebrafish Eye Movement in Multiple Larvae with ZebEyeTrack
Journal: Nature Protocols 13(7): pp. 1539–1568. doi: 10.1038/s41596-018-0002-0


Chagas M. A., Prieto-Godino L. L., Arrenberg A. B., Baden T.
The €100 Lab: A 3D-Printable Open-Source Platform for Fluorescence Microscopy, Optogenetics, and Accurate Temperature Control during Behaviour of Zebrafish, Drosophila, and Caenorhabditis Elegans
Journal: PLoS Biology 18 July 2017. doi: 10.1371/journal.pbio.2002702

Reinig S., Driever W., Arrenberg A. B.
The Descending Diencephalic Dopamine System Is Tuned to Sensory Stimuli
Journal: Current Biology 27(3): pp. 318–333. doi: 10.1016/j.cub.2016.11.059


Arrenberg A. B.
Fiber Optic-Based Photostimulation of Larval Zebrafish
Journal: Methods in Molecular Biology 1451: pp. 343–354. doi: 10.1007/978-1-4939-3771-4_24


Lee M. M., Arrenberg A. B., Aksay E.
A Structural and Genotypic Scaffold Underlying Temporal Integration
Journal: Journal of Neuroscience 35(20): pp. 7903–7920. doi: 10.1523/JNEUROSCI.3045-14.2015


Kubo F., Hablitzel B., dal Maschio M., Driever W., Baier H., Arrenberg A. B.
Functional Architecture of an Optic Flow-Responsive Area That Drives Horizontal Eye Movements in Zebrafish
Journal: Neuron 81(6): pp. 1344-1359. doi: 10.1016/j.neuron.2014.02.043

Gonçalves P. J., Arrenberg A. B., Hablitzel B., Baier H., Machens C. K.
Optogenetic perturbations reveal the dynamics of an oculomotor integrator
Journal: Front Neural Circuits. 2014 Feb 28;8:10. doi: 10.3389/fncir.2014.00010. eCollection 2014


Arrenberg A. B., Driever W.
Integrating anatomy and function for zebrafish circuit analysis
Journal: Front Neural Circuits. 2013 Apr 23;7:74. doi: 10.3389/fncir.2013.00074. eCollection 2013


Fernandes A. M., Fero K., Arrenberg A. B., Bergeron S. A., Driever W., Burgess H. A.
Deep Brain Photoreceptors Control Light-Seeking Behavior in Zebrafish Larvae
Journal: Current Biology 22(21): pp. 2042-2047. doi: 10.1016/j.cub.2012.08.016

Warp E., Baier H., Arrenberg A. B., Del Bene F., Conner A., Oldfield C. S., Friedmann D., Wyart C., Agarwal G., Isacoff E. Y.
Emergence of Patterned Activity in the Developing Zebrafish Spinal Cord
Journal: Current Biology 22(2): pp. 93-102. doi: 10.1016/j.cub.2011.12.002


Miri A., Daie K., Arrenberg A. B., Baier H., Aksay E., Tank D. W.
Spatial Gradients and Multidimensional Dynamics in a Neural Integrator Circuit
Journal: Nature Neuroscience 14(9): pp. 1150-1159. doi: 10.1038/nn.2888


Arrenberg A. B., Stainier D. Y., Baier H., Huisken J.
Optogenetic Control of Cardiac Function
Journal: Science 330(6006): pp. 971-974. doi: 10.1126/science.1195929

Schoonheim P. J., Arrenberg A. B., Del Bene F., Baier H.
Optogenetic Localization and Genetic Perturbation of Saccade-Generating Neurons in Zebrafish
Journal: Journal of Neuroscience 30(20): pp. 7111-7120. doi: 10.1523/JNEUROSCI.5193-09.2010


Arrenberg A. B., Del Bene F., Baier H.
Optical Control of Zebrafish Behavior with Halorhodopsin
Journal: Proceedings of the National Academy of Sciences 106(42): pp. 17968-17973. doi: 10.1073/pnas.0906252106


Scott E. K., Mason L., Arrenberg A. B., Ziv L., Gosse N. J., Xiao T., Chi N. C., Asakawa K., Kawakami K., Baier H.
Targeting Neural Circuitry in Zebrafish Using GAL4 Enhancer Trapping
Journal: Nature Methods 4(4): pp. 323-326. doi: 10.1038/nmeth1033